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Antibiotic-associated dysbiosis affects intestinal inflammation via the gut microbiota
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Human gut microbes are critical for maintaining the integrity of the GI tract, immune system homeostasis, and host energy metabolism. Alterations in this network can have health consequences, including inflammatory bowel disease (IBD). Antibiotic treatment compromises the composition of the gut microbiome, affecting microbial function and resulting in long-lasting detrimental effects on the host. A recent study examined how different antibiotics affect the ability of gut microbes to control intestinal inflammation. Researchers treated mice with antibiotics prior to fecal microbiota transplantation. They found that antibiotic pre-treatment significantly altered the ability of the microbiota to control intestinal inflammation. Streptomycin- and vancomycin-treated microbes failed to control inflammation, and pathobionts associated with IBD thrived. In contrast, microbes treated with metronidazole were able to control inflammation, and beneficial microbial species were enriched..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
02/26/2021
Antibiotic exposure disrupts the metabolic development of the microbiome in preterm infants
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"The period shortly after birth is a critical window for microbiome establishment. Antibiotics can impact this process, often negatively, but most of the research to date has been conducted on full-term infants and has rarely included infants that never received antibiotics, complicating the analysis. A recent study sought to close these gaps and examined the skin and gut microbiomes of preterm infants. While gestational age at birth had some influence on the maturation of the microbiome, postnatal age had a stronger impact. But brief exposure to antibiotics reversed the maturation trajectory between weeks one and three after birth, and antibiotic exposure impacted the abundance of potentially beneficial gut microbes. Some bacteria in our microbiome generate short-chain fatty acids, like butyrate and acetate, that our cells can use, but at three weeks after birth, the antibiotic-exposed infants had an altered microbiome with reduced capacity to produce these important metabolites..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
04/14/2023
Antibiotic growth promotants alter microbial gene expression in the chicken gut microbiome
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Antimicrobial resistance is a looming threat to global health. As a result, the livestock industry is moving away from using antibiotics in feed to enhance growth. But this shift may have led to increased rates of systemic infections and reduced production efficiency. Alternatives for antibiotic growth promotants (AGPs) are needed, but the mechanism behind the efficiency of AGPs is largely unknown. So, a recent study systematically evaluated the composition and function of the chicken gut microbial community in response to AGPs. The impact of AGPs was dependent on the birds' age and diet as well as the intestinal sampling location. Overall, AGPs had a limited impact on the abundances of specific microbial groups but did shift which groups were influential and exclude others. The chicken gut microbiome functionally responded to AGPs by changing the expression of multiple pathways, including by increasing expression of cell wall formation and antimicrobial resistance mechanism genes..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
04/14/2023
Antibiotics make way for fungal invasion in human gut
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Antibiotics are powerful for fighting infection. But they could create a dangerous imbalance in the gut, where the eradication of harmful bacteria might make room for gut fungi to invade. To find out, researchers analyzed stool samples from 14 healthy participants. Samples were collected over 3 months following a 6-day course of antibiotics. While the bacterial community mostly rebounded over those 3 months, the fungal community shifted from one characterized largely by mutually beneficial interactions (red) to one fraught with competitive interactions (blue) with half of the bacterial-fungal interactions detected before the antibiotic treatment disappearing 3 months later. Metagenomics data revealed that certain bacteria normally help keep opportunistic fungal pathogens like Candida albicans in check. Understanding how could help researchers find ways to restore balance to the gut microbiome following drug treatment or during disease..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
11/12/2020
Antimicrobial resistance in the gut microbiome of pigs: an extensive metagenomic analysis
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Antimicrobials are commonly used in agriculture and are important for animal health. This use drives most of the antimicrobial use globally and has led to an increase in antimicrobial resistance (AMR), including resistance to antimicrobials that are critical in human medicine. Researchers recently examined the AMR profiles of over 400 pigs, including wild boars, Tibetan pigs, and commercial pigs, under multiple rearing modes. They identified over a thousand potential antimicrobial resistance gene (ARG) sequences that belonged to 69 different drug resistance classes. From this dataset a few patterns emerged. Tetracycline resistance was the most enriched, but aminoglycoside resistance had the most unique ARGs. Farm-reared pigs had higher AMR levels than semi-free-range pigs or wild boars..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
05/18/2022
Antimicrobial-specific response from resistance gene carriers in a diverse microbiome
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Antimicrobial resistance (AMR) is an increasingly serious threat to global public health. New resistance mechanisms reduce our ability to treat common infectious diseases. Although microorganisms possessing AMR genes are thought to have emerged from natural habitats, better understanding is needed. A new study sought to examine the consequences of introducing antimicrobials into natural environments. Using lichen – a model for well-defined micro-ecosystems consisting of hundreds of microbial species – researchers evaluated changes in microbial communities following exposure to different antimicrobials. They found that the native lichen microbiome comprises highly diverse and low-abundance intrinsic antimicrobial resistance genes (ARGs) to cope with antimicrobial pressure. Antimicrobial-specific shifts occurred in the structure and function of the microbiome following 10 days of exposure to antimicrobials..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
02/25/2021
Bacteria and Chronic Infections -  Chronic Infections - Treatment Failure (20:23)
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In this presentation, we will introduce the mechanisms involved in the tolerance of biofilms to antibiotics. In continuation of this, we will talk about specific tolerance mechanism, oxidative stress and the development of mutational resistance.

Subject:
Applied Science
Health, Medicine and Nursing
Material Type:
Lecture
Provider:
University of Copenhagen
Author:
Professor Oana Ciofu
Date Added:
11/02/2018
Discovering Medicines, Using Robots and Computers
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Scientists who are working to discover new medicines often use robots to prepare samples of cells, allowing them to test chemicals to identify those that might be used to treat diseases. Students will meet a scientist who works to identify new medicines. She created free software that ''looks'' at images of cells and determines which images show cells that have responded to the potential medicines. Students will learn about how this technology is currently enabling research to identify new antibiotics to treat tuberculosis. Students will complete hands-on activities that demonstrate how new medicines can be discovered using robots and computer software, starring the student as ''the computer.'' In the process, the students learn about experimental design, including positive and negative controls.

Subject:
Biology
Life Science
Material Type:
Lecture
Provider:
MIT
Provider Set:
MIT Blossoms
Author:
Anne Carpenter
Date Added:
05/07/2015
Early life antimicrobial use and the effects on the saliva microbiome
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"The composition of the human microbiome has significant impacts on our health and changes in it have been associated with diseases like metabolic syndrome, atherosclerosis, and cirrhosis. Antimicrobial use profoundly affects intestinal microbiota composition. but little is known about the long-term effects of antimicrobial use on the saliva microbiome. A new study used data from the Finnish National Registry to examine the saliva microbiomes of preadolescents and compared groups with different histories of antimicrobial use. They found that antimicrobials’ effects varied by gender and drug regimen. For boys, antimicrobial use was associated with a decrease in microbial diversity in individuals while for girls, only azithromycin use was associated with reduced diversity. The community composition was altered in boys when all antimicrobials were analyzed. but when each antimicrobial was analyzed individually, only azithromycin use had a significant effect..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
11/12/2020
Fighting Back! (Lesson)
Read the Fine Print
Educational Use
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This lesson describes the major components and functions of the immune system and the role of engineers in keeping the body healthy (e.g., vaccinations and antibiotics, among other things). This lesson also discusses how an astronaut's immune system is suppressed during spaceflight due to stress and other environmental factors.

Subject:
Anatomy/Physiology
Applied Science
Engineering
Life Science
Material Type:
Activity/Lab
Lesson Plan
Provider:
TeachEngineering
Provider Set:
TeachEngineering
Author:
Denali Lander
Janet Yowell
Malinda Schaefer Zarske
Teresa Ellis
Date Added:
09/18/2014
Growth promoting and therapeutic antibiotics affect chicken microbiomes and resistomes
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Antibiotics are commonly used as both therapeutics and growth promoters in the poultry industry. Antibiotic use in animal husbandry has been linked to proliferation of antimicrobial resistance, but current evidence is indirect. To examine this problem directly, researchers studied the impact of the growth promoter bacitracin and the therapeutic antibiotic enrofloxacin on microbiomes and resistomes. They sampled both cloacal swabs and litter as proxies of gut and environmentally-disseminated microbiomes, coupling standard isolation and metagenomic methodologies. Antibiotic-resistant bacteria and resistance genes were ubiquitous in both the gut and litter and most of the variation in the microbiomes and resistomes was attributable to either growth stage or sample source. But, bacitracin-fed birds had higher levels of bacitracin resistance genes, and a greater proportion of their Enterococcaceae population was vancomycin-resistant..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
10/13/2021
Gut microbial imbalance contributes to disease progression and chemoresistance in prostate cancer
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"The gut microbiota plays a critical role in various human cancers. But how can these microbes affect cancers that develop relatively far from the gut? In the case of prostate cancer, new research points to the use of antibiotics. Antibiotics are known to cause gut dysbiosis, which is associated with multiple disorders. In mice with prostate cancer, researchers found that gut dysbiosis caused by antibiotics was linked to tumor growth. Mice given broad-spectrum antibiotics (Abx) showed increased tumor growth compared to control mice (NC). Antibiotics exposure also increased Proteobacteria abundance in mouse guts, a sign of dysbiosis. The mechanism behind these findings could be a leaky gut. Under dysbiosis, a leaky gut barrier allowed the release of lipopolysaccharide (LPS) – an inflammation-inducing factor – into the circulation, which then reached the prostate tumor..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
04/14/2023
Gut microbiota response to antibiotics is personalized and baseline microbiota-dependent
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Antibiotic treatment affects the gut microbiomes of different individuals to varying degrees. Such personalized responses may arise from differences in pretreatment microbiomes among individuals, but this possibility hasn’t been directly assessed in humans. To test this hypothesis, a recent study used high-throughput 16S rRNA sequencing to analyze 260 stool samples from 39 patients with acute myeloid leukemia. Each patient received multiple antibiotics during an approximately 4-week hospital stay for chemotherapy, and the samples were collected twice weekly. The results revealed that the microbe communities were more similar among samples from the same patient than among samples from different patients, suggesting that the communities maintained some continuity despite the heavy antibiotic treatment. Statistical analyses showed that the antibiotic-induced microbiome changes were dependent on the pretreatment microbiome compositions and identified 6 taxa that predicted the extent of the changes..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
03/01/2022
An Introduction to Global Health: Transcripts for videos from Karolinska Institutet
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Downloadable transcripts for the videos from Karolinska Institutet, from the course "An Introduction to Global Health".The course is originally published at EdX. 

Subject:
Health, Medicine and Nursing
Material Type:
Module
Author:
Maria Minard
Helena Nordenstedt
Date Added:
10/15/2019
An Introduction to global health - Antibiotic use and resistance (10:41)
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The discovery of antibiotics less than 100 years ago revolutionized health care, making former deadly diseases treatable. Still many people especially in low-income countries do not have access to these life-saving drugs, while att he same time, in many other arts of the world over-consumption of antibiotics is driving antimicrobial resistance, threatening to throw us back 100 years in time.
Get transcript for video here: https://www.oercommons.org/courseware/module/58789/overview

Subject:
Applied Science
Health, Medicine and Nursing
Material Type:
Lecture
Provider:
Karolinska Institutet
Provider Set:
An Introduction to Global health
Author:
Professor Cecilia Stålsby Lundborg
Date Added:
10/14/2015
Introductory Biology
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CC BY-NC-SA
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7.016 Introductory Biology provides an introduction to fundamental principles of biochemistry, molecular biology, and genetics for understanding the functions of living systems. Taught for the first time in Fall 2013, this course covers examples of the use of chemical biology and twenty-first-century molecular genetics in understanding human health and therapeutic intervention.
The MIT Biology Department Introductory Biology courses 7.012, 7.013, 7.014, 7.015, and 7.016 all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as the structure and synthesis of proteins, how these molecules are integrated into cells, and how these cells are integrated into multicellular systems and organisms. In addition, each version of the subject has its own distinctive material.

Subject:
Applied Science
Biology
Genetics
Health, Medicine and Nursing
Life Science
Physical Science
Material Type:
Full Course
Provider:
MIT
Provider Set:
MIT OpenCourseWare
Author:
Imperiali, Barbara
Martin, Adam
Ray, Diviya
Date Added:
09/01/2018
Lung function and microbiota diversity in cystic fibrosis
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Cystic fibrosis (CF) is a lung disorder affecting more than 70,000 people worldwide. Genetic mutations leading to defective fluid clearance in the lungs cause progressive airway damage. The most life-threatening challenge in patients with CF is chronic infections, which cause severe airway inflammation. Monitoring these infections could help doctors track patients’ health, informing treatment decisions. Unfortunately, current infection surveillance techniques provide a limited picture of the full spectrum of lung microbes in CF. A new study aimed to more fully define the lower airway bacterial microbiota in patients with CF. Using high-throughput sequencing, researchers evaluated sputum samples from 299 patients from Europe and the U.S. The results showed that microbiota diversity decreased when lung function declined..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
05/04/2020
Mechanisms of Drug Actions
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CC BY-NC-SA
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This course addresses the scientific basis for the development of new drugs. The first half of the semester begins with an overview of the drug discovery process, followed by fundamental principles of pharmacokinetics, pharmacodynamics, metabolism, and the mechanisms by which drugs cause therapeutic and toxic responses. The second half of the semester applies those principles to case studies and literature discussions of current problems with specific drugs, drug classes, and therapeutic targets.

Subject:
Applied Science
Biology
Engineering
Health, Medicine and Nursing
Life Science
Physical Science
Material Type:
Full Course
Provider:
MIT
Provider Set:
MIT OpenCourseWare
Author:
Dedon, Peter
Knutson, Charles
Murcko, Mark
Tannenbaum, Steven
Date Added:
09/01/2013
MicrobeWorld
Read the Fine Print
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Welcome to the Teachers' Corner of Small Things Considered. In this section, we include the posts we deem most adequate for teaching purposes. We have reorganized them into subject areas geared for a typical microbiology course. To date, this material has been used for various forms of intellectual enrichment, e.g., suggested readings, class presentations, a source of topics for term papers. You can also find here our Talmudic Questions, which we characterize as those whose answers cannot be found in Google. We are told that some of these questions have been used in exams ranging from tests for undergraduate courses to qualifying/prelims for graduate students.

Subject:
Ecology
Genetics
Life Science
Material Type:
Assessment
Reading
Provider:
American Society for Microbiology
Date Added:
10/23/2006
Microbiota therapeutic RBX2660 shows promising results in patients with recurrent Clostridioides difficile infection
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CC BY
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This resource is a video abstract of a research paper created by Research Square on behalf of its authors. It provides a synopsis that's easy to understand, and can be used to introduce the topics it covers to students, researchers, and the general public. The video's transcript is also provided in full, with a portion provided below for preview:

"Fecal microbiota transplantation is a promising procedure for preventing recurrent Clostridioides difficile infection (rCDI), which is the most frequently identified healthcare-associated infection in the US. Unfortunately, the effects of microbiota transplantations on the microbiome and resistome of rCDI patients have not been examined in detail. To address that gap, researchers recently conducted a randomized, double-blind, placebo-controlled clinical trial of the investigational microbiota therapeutic RBX2660 for patients with rCDI. Over the first 7 days after treatment, all patients showed significant recovery of gut microbiome architecture and a decreased abundance of antibiotic-resistance genes. However, patients receiving RBX2660 showed more significant and longer-lasting microbiome and resistome shifts toward a balanced configuration than those receiving the placebo..."

The rest of the transcript, along with a link to the research itself, is available on the resource itself.

Subject:
Biology
Life Science
Material Type:
Diagram/Illustration
Reading
Provider:
Research Square
Provider Set:
Video Bytes
Date Added:
11/12/2020