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OER Matters

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Keywords: bioinformatics

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A Natural View of Microbial Biodiversity within Hot Spring Cyanobacterial Mat Communities

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: This 18-page review summarizes a decade of research studying hot spring cyanobacterial mats as models for understanding principles of microbial community ecology. It addresses the emergence of molecular methods and the use of ecological and evolutionary patterns in understanding biodiversity. The full ... More »

About NCBI

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: About NCBI explains NCBI's role in facilitating research and education specific to the "fundamental molecular and genetic processes that control health and disease." An introduction to NCBI databases and maps helps researchers select tools that may help them. A particularly helpful feature is entitled ... More »

Bioinformatics and Proteomics, January (IAP) 2005

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: MIT OpenCourseWare
Grade Level: Post-secondary

Abstract: This interdisciplinary course provides a hands-on approach to students in the topics of bioinformatics and proteomics. Lectures and labs cover sequence analysis, microarray expression analysis, Bayesian methods, control theory, scale-free networks, and biotechnology applications. Designed for those with ... More »

Bioinformatics - From Sequence Expression and Structure

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Connexions
Grade Level: Post-secondary

Abstract: NOTE: THIS COURSE IS IN PREPARATION STAGE. AS LONG AS THIS NOTE IS VISIBLE, DO NOT RELY ON THE CONTENT. This is an advanced research-oriented Bioinformatics course: From Sequence to Expressions and Structure

Bioinformatics Glossary

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Type: Course Related Materials
Subject: Science and Technology
Collection: Connexions
Grade Level: Post-secondary

Abstract: Glossary of terms used in the bioinformatics course

Bioinformatics Homework Assignment: Accessing and Analyzing Nucleic Acid Sequence Data from NCBI's Database

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: This undergraduate activity introduces students to bioinformatics. During the guided activity students will access the National Center for Biotechnology Information's (NCBI) genetic sequence database to obtain and study DNA sequence entries relating to the chicken ovalbumin mRNA and genomic sequences.

Bioinformatics in the Biology Classroom

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: This educational journal article addresses the implementation of bioinformatics in the classroom. The author explains how bioinformatics could play a key role for science students pursuing higher education, foster inquiry learning of content that has often been taught in a dry manner, provide the thread ... More »

Bioinformatics Project

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Connexions
Grade Level: Post-secondary

Abstract: This project is designed to give the student experience using the bioinformatics tools that have been taught in previous modules in an independent project. The student will use the project outline to develop a bioinformatics problem or question according to their interests, and determine the appropriate ... More »

Bioinformatics- UH course

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Connexions
Grade Level: Post-secondary

Abstract: no abstract

Biology of Extremophiles Laboratory

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: This site is the home page for a laboratory dedicated to the biology of extremophiles at Institute of Genetics in Microbiology at the University of Paris, headed by Patrick Forterre. The site is a comprehensive collection of the extensive work the lab has contributed to the field of extremophiles and ... More »

Biomedical Information Technology (BE.453J), Spring 2005

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: MIT OpenCourseWare
Grade Level: Post-secondary

Abstract: The objective of this subject is to teach the design of contemporary information systems for biological and medical data. These data are growing at a prodigious rate, and new information systems are required. This subject will cover examples from biology and medicine to illustrate complete life cycle ... More »

Biomedical Information Technology, Spring 2005

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: MIT OpenCourseWare
Grade Level: Post-secondary

Abstract: The objective of this subject is to teach the design of contemporary information systems for biological and medical data. These data are growing at a prodigious rate, and new information systems are required. This subject will cover examples from biology and medicine to illustrate complete life cycle ... More »

Bios 533 Bioinformatics

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Connexions
Grade Level: Post-secondary

Abstract: Computer laboratory modules for the Introduction to Bioinformatics course. This course is designed for the beginning graduate student or advanced undergraduate in the biosciences. The goal is to introduce the student to various biologically relevant databases, methods to effectively search the databases, ... More »

BLAST for Beginners

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: This interactive tutorial is designed as a quick introduction to the BLAST family of sequence analysis programs. These slides show a progression of steps in accessing and using BLAST, beginning at the home page for the National Center for Biotechnology Information (NCBI) and ending at PubMed, a tool ... More »

Blaxter Lab Neglected Genomics

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: This website features the University of Edinburgh's Blaxter Lab for Neglected Genomics. The site serves as a jumping point to various aspect of the lab, including people, research, useful links, BLAST server, teaching pages, PartiGen, and the University of Edinburgh. It also features links to the nematode ... More »

Competitive Dominance among Strains of Luminous Bacteria Provides an Unusual Form of Evidence for Parallel Evolution in Sepiolid Squid-Vibrio Symbioses

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: This Applied and Environmental scholarly article reports experimental evidence of parallel speciation patterns in Squid-Vibrio symbioses. The article presents the derived molecular phylogenies for an array of sepiolid squids and their symbiont strains, an analysis of these phylogenies that revealed parallel ... More »

Computational Biology: Bioinformatics Unit

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: This site features an undergraduate Computational Biology course as part of the Red Layer Microbial Observatory (RLMO) Project's Original Waksman/NSF supported courses and workshops. The course is offered as part of RLMO's education and outreach in order to better prepare students in the widely-applicable ... More »

CyanoBase

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: This information database provides an easy way of accessing the sequences and all-inclusive annotation data on the structures of the cyanobacterial genomes. Cyanobacteria carry a complete set of genes for oxygenic photosynthesis, and are believed to be the ancient ancestors of chloroplast. Maintained ... More »

Desulfitobacterium hafniense

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Microbial Life (MLER) (SERC)
Grade Level: Secondary, Post-secondary

Abstract: Web page highlingts the microbe Desulfitobacterium. Thess microbes can anaerobicaly dehalogenate both aromatic and alkyl chlorinated compounds. Compounds including chlorinated phenols, chlorinated ethenes and polychlorinated biphenyls (PCBs). There is also background on the genus Desulfitobacterium. ... More »

Drug Design

Rating:
Type: Course Related Materials
Subject: Science and Technology
Collection: Connexions
Grade Level: Post-secondary

Abstract: This module explores the Synergix drug design resources web site. The relationship between drug discovery and bioinformatics is discussed. Several examples of bioinformatics methods used in the design of pharmaceutical are examined.

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